e-ISSN: Pending

Browse the failure-mode index

135 real negative results, null findings, and replication failures in Agricultural and Biological Sciences · Negative / Null Result Report. Search the index →

WASTE indexes published research — it does not host or republish full papers. Each entry is a metadata record compiled from open scholarly databases; the abstract is shown in full only where the paper is openly licensed, otherwise a short excerpt under fair use. Classifications are automated and approximate.

Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Clearcutting alters decomposition processes and initiates complex restructuring of fungal communities in soil and tree roots

Petr Kohout, Markéta Charvátová, Martina Štursová et al. · 2018 · The ISME Journal

Forest management practices often severely affect forest ecosystem functioning. Tree removal by clearcutting is one such practice, producing severe impacts due to the total reduction of primary productivity. Here, we assessed changes to…

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Determinants of smallholder farmers’ decision to adopt adaptation options to climate change and variability in the Muger Sub basin of the Upper Blue Nile basin of Ethiopia

Abayineh Amare, Belay Simane · 2017 · Agriculture & Food Security

Smallholder farmers’ decisions to adopt adaptation options in response to climate change and variability are influenced by socioeconomic, institutional, and environmental factors, indicating that decision patterns can be very specific to a given locality. The prime objective of this research is to identify factors affecting smallholder farmers’ decisions to adopt adaptation options to climate change and variability in the Muger River sub-basin of the Blue Nile basin of Ethiopia. Both quantitative and qualitative data were collected using a semi-structured questionnaire, focused group discussio

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Fungal and plant gene expression in the Tulasnella calospora–Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas

Valeria Fochi, Walter Chitarra, Annegret Kohler et al. · 2016 · New Phytologist

Orchids are highly dependent on their mycorrhizal fungal partners for nutrient supply, especially during early developmental stages. In addition to organic carbon, nitrogen (N) is probably a major nutrient transferred to the plant because…

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Abundance and Distribution of Transposable Elements in Two Drosophila QTL Mapping Resources

Julie M. Cridland, Stuart J. Macdonald, Anthony D. Long et al. · 2013 · Molecular Biology and Evolution

Here we present computational machinery to efficiently and accurately identify transposable element (TE) insertions in 146 next-generation sequenced inbred strains of Drosophila melanogaster. The panel of lines we use in our study is…

View details →
Negative / Null Result ReportAgricultural and Biological Sciences

The System of Rice Intensification and its Impacts on Household Income and Child Schooling: Evidence from Rural Indonesia

Kazushi Takahashi, Christopher B. Barrett · 2013 · American Journal of Agricultural Economics

Abstract The yield potential of a set of improved rice management practices, known as the System of Rice Intensification (SRI), has attracted much attention. Yet we know surprisingly little about SRI's socio‐economic impact. Using data…

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Impacts of the changing climate on agricultural productivity and food security: Evidence from Ethiopia

Ahmed Bouteska, Taimur Sharif, Faruk Bhuiyan et al. · 2024 · Journal of Cleaner Production

This study investigates the influence of climate change on agriculture productivity and food security in the context of Ethiopia. We use 2011–2020 state level data set of four major seasonal crops of Cash and Food in Ethiopia, namely, barley, wheat, maize, and sorghum. Methodologically, we apply the productivity function and the Ricardian approaches in the modelling for simulating the association of climate change with agriculture productivity. This study documents the interconnectedness among changes in climate, security of food and agriculture, indicating how the prior changes bring the latt

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Gut microbiota promotes host resistance to low-temperature stress by stimulating its arginine and proline metabolism pathway in adult Bactrocera dorsalis

Muhammad Fahim Raza, Yichen Wang, Zhaohui Cai et al. · 2020 · PLoS Pathogens

Gut symbiotic bacteria have a substantial impact on host physiology and ecology. However, the contribution of gut microbes to host fitness during long-term low-temperature stress is still unclear. This study examined the role of gut microbiota in host low-temperature stress resistance at molecular and biochemical levels in the oriental fruit fly Bactrocera dorsalis. The results showed that after the gut bacteria of flies were removed via antibiotic treatment, the median survival time was significantly decreased to approximately 68% of that in conventional flies following exposure to a temperat

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Genetic constraints predict evolutionary divergence in Dalechampia blossoms

Geir H. Bolstad, Thomas F. Hansen, Christophe Pélabon et al. · 2014 · Philosophical Transactions of the Royal Society B Biological Sciences

If genetic constraints are important, then rates and direction of evolution should be related to trait evolvability. Here we use recently developed measures of evolvability to test the genetic constraint hypothesis with quantitative…

View details →
Negative / Null Result ReportAgricultural and Biological Sciences

Lack of host specificity leads to independent assortment of dipterocarps and ectomycorrhizal fungi across a soil fertility gradient

Kabir Peay, Sabrina E. Russo, Krista L. McGuire et al. · 2015 · Ecology Letters

Plants interact with a diversity of microorganisms, and there is often concordance in their community structures. Because most community-level studies are observational, it is unclear if such concordance arises because of host specificity,…

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

A new composite climate change vulnerability index

Heidi Edmonds, Julie Lovell, C. A. Knox Lovell · 2020 · Ecological Indicators

The earth’s climate is changing, with global warming attributable to anthropogenic greenhouse gas emissions driven by economic and population growth. Human systems and ecosystems vary in their exposure, mitigation and adaptive capacity,…

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Metarhizium anisopliae Pathogenesis of Mosquito Larvae: A Verdict of Accidental Death

Tariq M. Butt, Bethany P. J. Greenfield, Carolyn Greig et al. · 2013 · PLoS ONE

Metarhizium anisopliae, a fungal pathogen of terrestrial arthropods, kills the aquatic larvae of Aedes aegypti, the vector of dengue and yellow fever. The fungus kills without adhering to the host cuticle. Ingested conidia also fail to germinate and are expelled in fecal pellets. This study investigates the mechanism by which this fungus adapted to terrestrial hosts kills aquatic mosquito larvae. Genes associated with the M. anisopliae early pathogenic response (proteinases Pr1 and Pr2, and adhesins, Mad1 and Mad2) are upregulated in the presence of larvae, but the established infection proces

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Sperm Swimming Velocity Predicts Competitive Fertilization Success in the Green Swordtail Xiphophorus helleri

Clelia Gasparini, Leigh W. Simmons, Maxine Beveridge et al. · 2010 · PLoS ONE

Sperm competition is expected to favour the evolution of traits that influence the performance of sperm when they compete to fertilize a female's eggs. While there is considerable evidence that selection favours increases in sperm numbers, much less is known about how sperm quality contributes towards competitive fertilization success. Here, we determine whether variation in sperm quality influences competitive fertilization success in the green swordtail Xiphophorus helleri, a highly promiscuous livebearing fish. We use artificial insemination as a method of controlled sperm delivery and show

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Phenotypic plasticity of thermal tolerance contributes to the invasion potential of Mediterranean fruit flies ( Ceratitis capitata )

Casper Nyamukondiwa, Elsje Kleynhans, John S. Terblanche · 2010 · Ecological Entomology

1. The invasion success of Ceratitis capitata probably stems from physiological, morphological, and behavioural adaptations that enable them to survive in different habitats. However, it is generally poorly understood if variation in acute…

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts

Dana A. Opulente, Abigail L. LaBella, Marie‐Claire Harrison et al. · 2024 · Science

Organisms exhibit extensive variation in ecological niche breadth, from very narrow (specialists) to very broad (generalists). Two general paradigms have been proposed to explain this variation: (i) trade-offs between performance efficiency and breadth and (ii) the joint influence of extrinsic (environmental) and intrinsic (genomic) factors. We assembled genomic, metabolic, and ecological data from nearly all known species of the ancient fungal subphylum Saccharomycotina (1154 yeast strains from 1051 species), grown in 24 different environmental conditions, to examine niche breadth evolution.

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Organic and Conventional Agriculture: A Useful Framing?

Carol Shennan, Timothy J. Krupnik, Graeme Baird et al. · 2017 · Annual Review of Environment and Resources

In this review, we examine the debate surrounding the role for organic agriculture in future food production systems. Typically represented as a binary organic–conventional question, this debate perpetuates an either/or mentality. We…

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Comparative Transcriptome Analyses inZymoseptoria triticiReveal Significant Differences in Gene Expression Among Strains During Plant Infection

Javier Palma‐Guerrero, Xin Ma, Stefano F. F. Torriani et al. · 2017 · Molecular Plant-Microbe Interactions

Zymoseptoria tritici is an ascomycete fungus that causes Septoria tritici blotch, a globally distributed foliar disease on wheat. Z. tritici populations are highly polymorphic and exhibit significant quantitative variation for virulence.…

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Gut microbiomes and reproductive isolation in Drosophila

Philip T. Leftwich, Naomi V. E. Clarke, Matthew I. Hutchings et al. · 2017 · Proceedings of the National Academy of Sciences

Significance The evolutionary significance of assortative mating by diet, mediated by gut bacteria is a puzzle, but it has had a huge impact and has provided a keystone to support increasing interest in the “holobiome.” However, in species…

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Factors that influence the implementation of sustainable land management practices by rural households in Tigrai region, Ethiopia

Haftu Etsay, Teklay Negash, Metkel Aregay · 2019 · Ecological Processes

Sustainable land management is considered as one of the useful approaches to combat the threat of various forms of land degradation in Ethiopia. Despite this, there is scant information regarding households’ decision towards the implementation of sustainable land management practices. This paper, therefore, looks into the determinants for the continued use and choice of the sustainable land management practices by smallholder farmers and its productivity effect in three randomly chosen districts in Tigrai region, Ethiopia. The study uses data from household survey and key informant interviews.

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Changes in the intestinal bacterial community, short-chain fatty acid profile, and intestinal development of preweaned Holstein calves. 2. Effects of gastrointestinal site and age

J. Castro, Andrés Gómez, Bryan A. White et al. · 2016 · Journal of Dairy Science

The objective of this work was to assess the effects of age and gastrointestinal location (rumen vs. colon) on bacterial community diversity and composition, as well as short-chain fatty acid profiles of preruminant male Holstein calves on…

View details →
Negative / Null Result ReportAgricultural and Biological Sciences

Dissecting the Contributions of Plasticity and Local Adaptation to the Phenology of a Butterfly and Its Host Plants

Albert B. Phillimore, Sandra Stålhandske, R. Smithers et al. · 2012 · The American Naturalist

Phenology affects the abiotic and biotic conditions that an organism encounters and, consequently, its fitness. For populations of high-latitude species, spring phenology often occurs earlier in warmer years and regions. Here we apply a…

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Droughts and floods in Malawi: impacts on crop production and the performance of sustainable land management practices under weather extremes

Nancy McCarthy, Talip Kilic, Josh Brubaker et al. · 2021 · Environment and Development Economics

Abstract Climate change is predicted to increase the frequency of extreme weather events, increasing the vulnerability of smallholder farmers dependent on rain-fed agriculture. We evaluate the extent to which farmers in Malawi suffer crop production losses due to extreme weather, and whether sustainable land management (SLM) practices help shield crop production losses from extreme events. We use a three period panel dataset where widespread floods and droughts occurred in separate periods, offering a unique opportunity to evaluate impacts using data collected immediately following these event

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Changes in structure and assembly of a species-rich soil natural community with contrasting nutrient availability upon establishment of a plant-beneficial Pseudomonas in the wheat rhizosphere

Daniel Garrido‐Sanz, Senka Čaušević, Jordan Vacheron et al. · 2023 · Microbiome

BACKGROUND: Plant-beneficial bacterial inoculants are of great interest in agriculture as they have the potential to promote plant growth and health. However, the inoculation of the rhizosphere microbiome often results in a suboptimal or transient colonization, which is due to a variety of factors that influence the fate of the inoculant. To better understand the fate of plant-beneficial inoculants in complex rhizosphere microbiomes, composed by hundreds of genotypes and multifactorial selection mechanisms, controlled studies with high-complexity soil microbiomes are needed. RESULTS: We analys

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Infection Dynamic of Symbiotic Bacteria in the Pea Aphid Acyrthosiphon pisum Gut and Host Immune Response at the Early Steps in the Infection Process

François Renoz, Christine Noël, Abdelmounaim Errachid et al. · 2015 · PLoS ONE

In addition to its obligatory symbiont Buchnera aphidicola, the pea aphid Acyrthosiphon pisum can harbor several facultative bacterial symbionts which can be mutualistic in the context of various ecological interactions. Belonging to a genus where many members have been described as pathogen in invertebrates, Serratia symbiotica is one of the most common facultative partners found in aphids. The recent discovery of strains able to grow outside their host allowed us to simulate environmental acquisition of symbiotic bacteria by aphids. Here, we performed an experiment to characterize the A. pis

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Mix it and fix it: functions of composite olfactory signals in ring-tailed lemurs

Lydia K. Greene, Kathleen E. Grogan, Kendra Smyth et al. · 2016 · Royal Society Open Science

Animals communicating via scent often deposit composite signals that incorporate odorants from multiple sources; however, the function of mixing chemical signals remains understudied. We tested both a 'multiple-messages' and a 'fixative' hypothesis of composite olfactory signalling, which, respectively, posit that mixing scents functions to increase information content or prolong signal longevity. Our subjects-adult, male ring-tailed lemurs (Lemur catta)-have a complex scent-marking repertoire, involving volatile antebrachial (A) secretions, deposited pure or after being mixed with a squalene-

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Flaxseed-Derived Enterolactone Is Inversely Associated with Tumor Cell Proliferation in Men with Localized Prostate Cancer

Maria Azrad, Robin T. Vollmer, John F. Madden et al. · 2013 · Journal of Medicinal Food

Enterolactone and enterodiol, mammalian lignans derived from dietary sources such as flaxseed, sesame seeds, kale, broccoli, and apricots, may impede tumor proliferation by inhibiting activation of nuclear factor kappa B (NFκB) and…

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Genetic diversity of Phytophthora infestans in the Northern Andean region

Martha Cárdenas, Alejandro Grajales, Roberto Sierra et al. · 2011 · BMC Genetics

BACKGROUND: Phytophthora infestans (Mont.) de Bary, the causal agent of potato late blight, is responsible for tremendous crop losses worldwide. Countries in the northern part of the Andes dedicate a large proportion of the highlands to the production of potato, and more recently, solanaceous fruits such as cape gooseberry (Physalis peruviana) and tree tomato (Solanum betaceum), all of which are hosts of this oomycete. In the Andean region, P. infestans populations have been well characterized in Ecuador and Peru, but are poorly understood in Colombia and Venezuela. To understand the P. infest

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Pollination Services Provided by Bees in Pumpkin Fields Supplemented with Either Apis mellifera or Bombus impatiens or Not Supplemented

Jessica D. Petersen, Stephen Reiners, Brian A. Nault · 2013 · PLoS ONE

Pollinators provide an important service in many crops. Managed honey bees (Apis mellifera L.) are used to supplement pollination services provided by wild bees with the assumption that they will enhance pollination, fruit set and crop yield beyond the levels provided by the wild bees. Recent declines in managed honey bee populations have stimulated interest in finding alternative managed pollinators to service crops. In the eastern U.S., managed hives of the native common eastern bumble bee (Bombus impatiens Cresson) may be an excellent choice. To examine this issue, a comprehensive 2-yr stud

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Decay of velvet worms (Onychophora), and bias in the fossil record of lobopodians

Duncan Murdock, Sarah E. Gabbott, Georg Mayer et al. · 2014 · BMC Evolutionary Biology

BACKGROUND: Fossil lobopodians, including animals proposed to have close affinity to modern onychophorans, are crucial to understanding the evolution of the panarthropod body plan and the phylum-level relationships between the ecdysozoan groups. Unfortunately, the key features of their anatomy are un-mineralized and subject to biases introduced during death, decay and preservation, yet the extent to which these fossils have been affected by the processes of post-mortem decay is entirely untested. Recent experimental work on chordates has highlighted a profound bias caused by decay, resulting i

View details →
Negative / Null Result ReportOpen accessAgricultural and Biological Sciences

Single‐base methylome profiling of the giant kelp Saccharina japonica reveals significant differences in DNA methylation to microalgae and plants

Xiao Fan, Wentao Han, Linhong Teng et al. · 2019 · New Phytologist

Brown algae have convergently evolved plant-like body plans and reproductive cycles, which in plants are controlled by differential DNA methylation. This contribution provides the first single-base methylome profiles of haploid gametophytes and diploid sporophytes of a multicellular alga. Although only c. 1.4% of cytosines in Saccharina japonica were methylated mainly at CHH sites and characterized by 5-methylcytosine (5mC), there were significant differences between life-cycle stages. DNA methyltransferase 2 (DNMT2), known to efficiently catalyze tRNA methylation, is assumed to methylate the

View details →