Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes
Prakash Raj Timilsena; Eric Wafula; Craig F. Barrett; Saravanaraj Ayyampalayam; Joel R. McNeal; Jeremy D. Rentsch; Michael R. McKain; Karolina Heyduk · 2022 · Frontiers in Plant Science
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Abstract
We assess relationships among 192 species in all 12 monocot orders and 72 of 77 families, using 602 conserved single-copy (CSC) genes and 1375 benchmarking single-copy ortholog (BUSCO) genes extracted from genomic and transcriptomic datasets. Phylogenomic inferences based on these data, using both coalescent-based and supermatrix analyses, are largely congruent with the most comprehensive plastome-based analysis, and nuclear-gene phylogenomic analyses with less comprehensive taxon sampling. The strongest discordance between the plastome and nuclear gene analyses is the monophyly of a clade com
Abstract by Prakash Raj Timilsena; Eric Wafula; Craig F. Barrett; Saravanaraj Ayyampalayam; Joel R. McNeal; Jeremy D. Rentsch; Michael R. McKain; Karolina Heyduk, Frontiers in Plant Science (2022) — licensed CC BY 4.0.
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Metadata source: OpenAlex · DOI 10.3389/fpls.2022.876779